Software Developer
4 days ago
About the Role
You will join a team of software engineers at Embl-Ebi, responsible for the design, development, and operations of high-throughput pipelines necessary to support scientists worldwide by ingesting, processing, persisting, and distributing high volumes of sequence data.
Key Responsibilities
- Collaborate with ENA's development and operational teams, EBI's IT and Technical services teams, and the International Nucleotide Sequence Database Collaboration (INSDC) to ensure seamless data processing and distribution.
- Work together with a team of software engineers to design, develop, and maintain high-throughput pipelines using Java and Spring framework.
- Utilize workflow management systems and distributed data processing software (e.g., Hadoop, Spark) to optimize data processing and analysis.
- Develop and maintain large-scale databases (e.g., Oracle, MongoDB) to store and manage sequence data.
- Apply excellent knowledge of the UNIX command line to troubleshoot and optimize pipeline performance.
- Adhere to modern software development practices, including continuous integration and deployment, application of various software testing principles, processes, and tools, and system monitoring.
- Contribute to a team environment with a diverse range of skills and backgrounds.
Desirable Skills
- Experience working in a multidisciplinary scientific environment.
- Knowledge of sequence data and sequence data formats (incl. FASTQ, BAM, CRAM, SRA).
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