Data Infrastructure Specialist

3 weeks ago


Cambridge, Cambridgeshire, United Kingdom Origin Sciences Full time

Job Title: Data Engineer

Company: Origin Sciences

We are a start-up biotechnology company based in the UK, developing innovative medical devices for clinical trials. Our biobank provides clinical material for research and development streams to assist with diagnostic development.

Our primary disease area is Colorectal Cancer (CRC). We are creating a minimally invasive and accurate CRC diagnostic, which will allow the NHS to focus more resources on patients with serious pathologies.

The role:

We are seeking a Data Engineer to manage our data infrastructure and integrate data between teams to streamline data flow at an organisational level.

The Data Engineer will be responsible for managing data flow and cloud infrastructure, processing large volumes of sequencing data, and implementing improvements to enhance usability and security of our infrastructure.

Main Duties & Responsibilities:

  • Manage organisational cloud resources to enable us to process large volumes of sequencing data.
  • Implement improvements to enhance usability and security of our infrastructure.
  • Implement automation to streamline data collection from laboratory instruments.
  • Use ETL to help with centralisation of organisational data
  • Ad hoc requests for engineering support from the laboratory and clinical teams.

Requirements

Skills & Qualification:

  • Bachelor of Science degree or equivalent technical degree or equivalent experience.
  • Python/R or equivalent programming language for data processing.
  • Experience configuring and managing cloud infrastructure.
  • Experience configuring and managing cloud resources.
  • Understanding of cloud security best practices.
  • Familiar integrating APIs with existing infrastructure for process automation.
  • Experience with containerisation, such as Docker or Singularity.
  • Experience with schedulers, such as AWS Batch, GCP Batch or Slurm.
  • Git and version control
  • Ability to critically evaluate data-handling practices in a commercial R&D environment
  • Understanding of data management best practices

Desirable:

  • Associate level cloud certification
  • SQL and relational databases
  • Understanding of how to process human genomics data in line with UK GDPR requirements.

Benefits

  • 25 days holiday
  • Pension contribution


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