Bioimaging Data Resources Research Software Engineer
1 week ago
The EMBL-EBI is seeking a talented research software engineer to support the development of its bioimaging data resources. The successful candidate will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.
Key Responsibilities- Design and implement systems to support rapid deposition, curation, and archival of biological image data.
- Develop systems for interactive online exploration of biological image data, working with existing tools, extending these, and developing new solutions as appropriate.
- Act as liaison between the BioImage Archive/EMPIAR and EMBL-EBI's compute/storage infrastructure teams to deploy and manage these systems.
- Coordinate with other service teams on shared development and process implementation.
- Contribute to the broader team activities, including helpdesk support, planning, design review, and improvement of the team's software development processes.
- University degree in computer science, life sciences, or a related discipline.
- Several years' experience in a software development capacity.
- Substantial experience developing full-stack applications.
- Extensive hands-on experience with JavaScript and Python.
- Working with relational databases such as PostgreSQL or MySQL.
- Software development lifecycle, including design, implementation, testing, continuous integration, deployment, and version control.
- Working with Linux systems.
- Experience working with bioimaging data from one or more modalities.
- Experience developing or integrating image visualization systems.
- Experience with NoSQL databases, such as MongoDB.
- Experience with batch scheduling systems such as SLURM.
- Experience with containerization (e.g., Docker) and container orchestration (e.g., Kubernetes).
- Infrastructure-as-code deployment tools such as Ansible or Terraform.
- Experience working in an academic environment.
EMBL-EBI is a world-leader in archival and dissemination of biological image data, operating the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive). The organization provides critical services to tens of thousands of scientists worldwide.
Benefits and Contract InformationThe successful candidate will receive a competitive salary, annual salary review, pension scheme, death benefit, long-term care, accident-at-work, and unemployment insurances. The position is a 2-year contract, non-renewable. The organization offers a relocation package, including installation grant, and a generous time-off policy.
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Saffron Walden, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Careers Full timeAbout the RoleThe advancement of imaging technologies has led to a pressing need for sharing, integrating, and reusing image data in a comprehensive manner. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR, providing the means to store and search life science datasets from all imaging...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Careers Full timeAbout the RoleThe advancement of imaging technologies has led to a pressing need for sharing, integrating, and reusing image data in a comprehensive manner. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR, providing the means to store and search life science datasets from all imaging...
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Saffron Walden, United Kingdom EMBL-EBI Full timeAbout the RoleThe EMBL-EBI is seeking a talented research software engineer to support the development of its bioimaging data resources. The successful candidate will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and implement...
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Saffron Walden, United Kingdom EMBL-EBI Full timeAbout the RoleThe EMBL-EBI is seeking a talented research software engineer to support the development of its bioimaging data resources. The successful candidate will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and implement...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will play a crucial role in extending our services to support the growing biosciences AI community and accommodating new imaging modalities such as cryoET.Key ResponsibilitiesDesign...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will work across the technical stack to scale and automate deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and implement...
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Saffron Walden, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to join our team at EMBL-EBI, a world-leader in archival and dissemination of biological image data. The successful candidate will play a key role in supporting the next phases of development for our bioimaging data resources, extending services to support the growing biosciences AI community...
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Saffron Walden, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to join our team at EMBL-EBI, a world-leader in archival and dissemination of biological image data. The successful candidate will play a key role in supporting the next phases of development for our bioimaging data resources, extending services to support the growing biosciences AI community...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will work across the technical stack to scale and automate deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and implement...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will work across the technical stack to scale and automate deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and implement...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeUnlocking the Power of Imaging TechnologiesThe rapid advancement of imaging technologies has created a pressing need for comprehensive sharing, integration, and reuse of image data.At EMBL-EBI, we are at the forefront of archival and dissemination of biological image data, operating the BioImage Archive and EMPIAR, which provide a robust platform for storing...
-
Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeUnlocking the Power of Imaging TechnologiesThe rapid advancement of imaging technologies has created a pressing need for comprehensive sharing, integration, and reuse of image data.At EMBL-EBI, we are at the forefront of archival and dissemination of biological image data, operating the BioImage Archive and EMPIAR, which provide a robust platform for storing...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Careers Full timeJob SummaryThe revolution in imaging technologies has led to the need to share, integrate and reuse image data in a comprehensive way. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and search life science...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Careers Full timeJob SummaryThe revolution in imaging technologies has led to the need to share, integrate and reuse image data in a comprehensive way. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and search life science...
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Software Engineer
2 weeks ago
Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimaging Data Resources. As a key member of our team, you will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and...
-
Software Engineer
2 weeks ago
Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimaging Data Resources. As a key member of our team, you will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and...
-
Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimage Archive and EMPIAR, which provide critical services to tens of thousands of scientists worldwide.Key ResponsibilitiesDesign and implement systems to support rapid deposition, curation, and archival of biological image data, including...
-
Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimage Archive and EMPIAR, which provide critical services to tens of thousands of scientists worldwide.Key ResponsibilitiesDesign and implement systems to support rapid deposition, curation, and archival of biological image data, including...
-
Saffron Walden, United Kingdom EMBL-EBI Careers Full timeThe revolution in imaging technologies has led to the need to share, integrate and reuse image data in a comprehensive way. EMBL-EBI is a world-leader in archival and dissemination of biological image data, operating the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), which together provide the means to store and search life...
