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Bioimaging Data Resources Research Software Engineer
2 months ago
We are seeking a talented Research Software Engineer to join our team at EMBL-EBI, a world-leader in archival and dissemination of biological image data. The successful candidate will play a key role in supporting the next phases of development for our bioimaging data resources, extending services to support the growing biosciences AI community and accommodating new imaging modalities such as cryoET.
Key Responsibilities- Design and implement systems to support rapid deposition, curation, and archival of biological image data, including back-end, front-end, and supporting infrastructure.
- Develop systems for interactive online exploration of biological image data, working with existing tools, extending these, and developing new solutions as appropriate.
- Act as liaison between the BioImage Archive/EMPIAR and EMBL-EBI's compute/storage infrastructure teams to deploy and manage these systems.
- Coordinate with other service teams on shared development and process implementation.
- Contribute to the broader team activities, including helpdesk support, planning, design review, and improvement of the team's software development processes.
- University degree in computer science, life sciences, or a related discipline.
- Several years' experience in a software development capacity.
- Substantial experience developing full-stack applications.
- Extensive hands-on experience with JavaScript and Python.
- Working with relational databases such as PostGres or MySQL.
- Software development lifecycle, including design, implementation, testing, continuous integration, deployment, and version control.
- Working with Linux systems.
- Experience working with BioImaging data from one or more modalities.
- Experience developing or integrating image visualization systems.
- Experience with NoSQL databases, such as MongoDB.
- Experience with batch scheduling systems such as SLURM.
- Experience with containerization (e.g. Docker) and container orchestration (e.g. Kubernetes).
- Infrastructure-as-code deployment tools such as Ansible or Terraform.
- Experience working in an academic environment.
EMBL-EBI is a world-leader in archival and dissemination of biological image data. We provide world-class open data and services to the global community. We are committed to diversity and inclusion, and we encourage applications from women, LGBTQ+ individuals, and individuals from all nationalities.
