Bioimaging Data Resources Research Software Engineer
4 days ago
We are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will work across the technical stack to scale and automate deposition and presentation systems for high volumes of biological image data.
Key Responsibilities- Design and implement systems to support rapid deposition, curation, and archival of biological image data, including back-end, front-end, and supporting infrastructure.
- Develop systems for interactive online exploration of biological image data, working with existing tools, extending these, and developing new solutions as appropriate.
- Act as liaison between the BioImage Archive/EMPIAR and EMBL-EBI's compute/storage infrastructure teams to deploy and manage these systems.
- Coordinate with other service teams on shared development and process implementation.
- Contribute to the broader team activities, including helpdesk support, planning, design review, and improvement of the team's software development processes.
- University degree in computer science, life sciences, or a related discipline.
- Several years of experience in a software development capacity.
- Substantial experience developing full-stack applications.
- Extensive hands-on experience with JavaScript and Python.
- Working with relational databases such as PostgreSQL or MySQL.
- Software development lifecycle, including design, implementation, testing, continuous integration, deployment, and version control.
- Working with Linux systems.
- Experience working with bioimaging data from one or more modalities.
- Experience developing or integrating image visualization systems.
- Experience with NoSQL databases, such as MongoDB.
- Experience with batch scheduling systems such as SLURM.
- Experience with containerization (e.g., Docker) and container orchestration (e.g., Kubernetes).
- Infrastructure-as-code deployment tools such as Ansible or Terraform.
- Experience working in an academic environment.
EMBL-EBI is a world-leader in archival and dissemination of biological image data, operating the BioImage Archive and EMPIAR. We provide critical services to tens of thousands of scientists worldwide.
What We Offer- Financial incentives, including a monthly family/marriage allowance, child allowance, non-resident allowance, annual salary review, pension scheme, death benefit, long-term care, accident-at-work, and unemployment insurances.
- Hybrid working arrangements.
- Private medical insurance for you and your immediate family.
- Generous time off, including 30 days annual leave per year, in addition to eight bank holidays.
- Relocation package, including installation grant.
- On-site nursery, child sick leave, generous parental leave, holiday clubs on campus, and monthly family and child allowances.
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will play a crucial role in extending our services to support the growing biosciences AI community and accommodating new imaging modalities such as cryoET.Key ResponsibilitiesDesign...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our bioimaging data resources. As a key member of our team, you will work across the technical stack to scale and automate deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and implement...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Careers Full timeJob SummaryThe revolution in imaging technologies has led to the need to share, integrate and reuse image data in a comprehensive way. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and search life science...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Careers Full timeJob SummaryThe revolution in imaging technologies has led to the need to share, integrate and reuse image data in a comprehensive way. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and search life science...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimaging Data Resources. As a key member of our team, you will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimaging Data Resources. As a key member of our team, you will work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.Key ResponsibilitiesDesign and...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimage Archive and EMPIAR, which provide critical services to tens of thousands of scientists worldwide.Key ResponsibilitiesDesign and implement systems to support rapid deposition, curation, and archival of biological image data, including...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleWe are seeking a talented Research Software Engineer to support the next phases of development for our Bioimage Archive and EMPIAR, which provide critical services to tens of thousands of scientists worldwide.Key ResponsibilitiesDesign and implement systems to support rapid deposition, curation, and archival of biological image data, including...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleThe revolution in imaging technologies has led to a significant need to share, integrate, and reuse image data in a comprehensive manner. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleThe revolution in imaging technologies has led to a significant need to share, integrate, and reuse image data in a comprehensive manner. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and...
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Saffron Walden, Essex, United Kingdom EMBL-EBI Full timeAbout the RoleThe revolution in imaging technologies has led to a significant need to share, integrate, and reuse image data in a comprehensive manner. As a world-leader in archival and dissemination of biological image data, EMBL-EBI operates the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), providing the means to store and...
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