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Scientific Software Developer

2 months ago

Oxford, Oxfordshire, United Kingdom Oxford Nanopore Technologies Full time
About the Role

Oxford Nanopore Technologies is a leading biotechnology company that specializes in the development of innovative sequencing technologies. Our mission is to enable the analysis of any living thing, by anyone, anywhere.

Job Summary

We are seeking a highly skilled Scientific Software Developer to join our Customer Analysis Workflows group. The successful candidate will be responsible for developing and maintaining new bioinformatic analyses to be coupled with particular experiment scenarios, targeting particular scientific and clinical questions.

Key Responsibilities
  • Take ownership of newly identified workflows and collaborate within the group to resolve how best to present these.
  • Collaborate closely with our teams within the various R&D groups at ONT to identify analysis workflows potentially useful to customers.
  • Adapt standard bioinformatic tools to long-read nanopore sequencing.
  • Identify areas for tool development, and work with Algorithm Research colleagues to explore options.
  • Define and promote best-practices for ONT's open-source analysis software.
  • Maintain abreast of external advances in the field of long-read data analysis and the requirements of end-users as determined by various customer facing teams.
Requirements
  • Hold at least a MSc (or equivalent experience) involving a meaningful amount of programming in a high-level language.
  • A PhD or proven experience requiring understanding of DNA/RNA sequencing analysis is desirable.
  • Experience in software development on Debian-based linuxes.
  • Expertise in bioinformatics workflows and knowledge of workflow management software (particularly Nextflow) and practical experience of handling sequencing data with exposure to common software (samtools, bcftools).
  • Familiarity with long-read sequencing.
  • Strong Python programming skills (development, testing, packaging).
  • Familiarity with continuous integration and deployment and a willingness to adapt, listen and learn new skills.