GPU Performance Optimization Specialist

2 days ago

Oxford, Oxfordshire, United Kingdom Oxford Nanopore Technologies Full time
About the Role

Oxford Nanopore Technologies is a leading biotechnology company that specializes in the development of innovative sequencing platforms. Our mission is to enable the analysis of any living thing, by anyone, anywhere.

We are seeking a highly skilled and innovative individual to join our team as a GPU Performance Optimization Specialist. In this role, you will focus on optimizing machine learning inference for our open-source software, including the base caller dorado, by writing high-performance code for GPUs using CUDA, OpenCL, Metal, and other similar technologies.

Key Responsibilities
  • Collaborate with the development team and experienced C++ engineers to optimize machine learning inference algorithms for high-performance execution on GPUs.
  • Implement, benchmark, and refine high-performance computing solutions using CUDA, OpenCL, Metal, or other GPU programming frameworks.
  • Analyze and optimize the performance of existing codebases, identifying bottlenecks and implementing solutions to improve efficiency.
  • Focus on optimizing the performance of bioinformatics tools, such as alignment and variant calling.
  • Work closely with software engineers, data scientists, and researchers to integrate performance improvements into our machine learning pipeline.
  • Stay up-to-date with the latest developments in GPU programming and high-performance computing, and apply this knowledge to enhance our software.
  • Document and communicate optimization strategies and results to both technical and non-technical stakeholders.
Requirements
  • Extensive experience with GPU programming and high-performance computing using CUDA, OpenCL, Metal, or similar technologies.
  • Proven track record of optimizing code for performance and efficiency on GPU architectures.
  • Strong programming skills in C/C++, Python, and other relevant languages.
  • Familiarity with machine learning frameworks such as TensorFlow, PyTorch, or similar is a plus.
  • Ability to work independently and collaboratively within a team environment.
  • Excellent problem-solving skills and attention to detail.
  • Good communication and interpersonal skills with the ability to explain complex technical concepts to a diverse audience.
Preferred Qualifications
  • A degree in computer science, engineering, mathematics, physics, or a related field, or equivalent experience.
  • Experience with optimizing machine learning inference for bioinformatics or related applications.
  • Knowledge of low-level programming and performance profiling tools.
  • Experience with open-source software development and contribution.
  • Bioinformatics experience is nice to have but not expected.

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