Genomic Data Specialist

3 weeks ago

London, Greater London, United Kingdom Our Future Health Full time

Job Title: Genomic Data Specialist

Job Summary: We are seeking a highly skilled Genomic Data Specialist to join our team at Our Future Health.

As a Genomic Data Specialist, you will play a key role in supporting the development of data pipelines from data providers to our primary data store and trusted research environment.

Main Responsibilities:

  • Design, build, and test pipelines using a range of different technologies.
  • Develop prototypes for complex transformations drawing on existing workflows developed in industry and academia.
  • Keep abreast of best practice in data engineering across industry, research, and Government.
  • Facilitate the adoption of standards and provide technical input into the upstream parts of the data pipeline.
  • Work with researchers to understand the data requirements and deliver the data needed for their projects.

About the Role:

You will be part of a multidisciplinary team that's creating pipelines that didn't exist before, owning them in production, and improving them over time.

Requirements:

You will have a solid understanding and experience of bioinformatics, in particular tools and methods associated with genomic data.

We are looking for someone with some of the following skills:

  • Experience of working in an agile development team following best practices like code review and pairing.
  • Familiar with version control and Git/GitHub.
  • Able to design, build, and test pipelines using a range of different technologies.
  • Experience with storing, searching, and filtering large-scale genomic data.
  • Good understanding of cloud environments (ideally Azure), distributed computing, and scaling workflows and pipelines.
  • Proficient in Python.
  • Experience with workflow management tools, e.g., Nextflow, WDL/Cromwell, Airflow, Prefect, Dagster.
  • Understanding of common data transformation and storage formats, e.g., Apache Parquet.
  • Experience with data lakes; experience with Spark, Databricks.
  • Understanding of containerisation, e.g., Docker.
  • Awareness of data standards such as GA4GH (https://www.ga4gh.org/) and FAIR (https://www.go-fair.org/fair-principles/).

Benefits:

We offer a range of benefits, including:

  • Up to £60,000 per annum basic salary.
  • Generous company pension package with employer contributions of up to 12%.
  • 30 days annual leave (plus bank holidays).
  • Continuous career development with regular appraisals and learning and development opportunities.
  • A lovely new office in Holborn, Central London – we offer flexible and remote working arrangements.

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