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Research Software and Data Engineer

2 months ago

Hinxton, United Kingdom Society of Research Software Engineering Full time
Job Title: Research Software and Data Engineer

The revolution in imaging technologies has led to a significant increase in the need to share, integrate, and reuse image data in a comprehensive way. EMBL-EBI is a world-leader in archival and dissemination of biological image data, operating the BioImage Archive and EMPIAR (the Electron Microscopy Public Image Archive), which together provide the means to store and search life science datasets from all imaging technologies at all scales and across all modalities.

Key Responsibilities:
  • Support the next phases of development for the BioImage Archive and EMPIAR, extending services to support the growing biosciences AI community and accommodate new imaging modalities such as cryoET.
  • Work across the technical stack to support scaling and automation of deposition and presentation systems for high volumes of biological image data.
  • Extend and build on the EMBL-EBI imaging resources to enable better automation, integrate with high performance computing and storage resources, and develop/implement new functionality, such as extraction of structured metadata from freeform text through LLMs.
  • Develop and integrate systems for interactive visualisation of biological images, aiming to make biology beautiful.
Requirements:
  • University degree in computer science, life sciences or a related discipline.
  • Several years' experience in a software development capacity.
  • Substantial experience developing full stack applications.
  • Extensive hands-on experience with Javascript and Python.
  • Working with relational databases such as PostGres or MySQL.
  • Software development lifecycle, including design, implementation, testing, continuous integration, deployment and version control.
  • Working with Linux systems.
  • A strong affinity with, and enthusiasm for, the goal of EMBL-EBI to provide world-class open data and services to the global community.
  • Experience working with BioImaging data from one or more modalities.
  • Experience with NoSQL databases, such as MongoDB.
  • Infrastructure-as-code deployment tools such as Ansible or Terraform.
  • Experience working in an academic environment.
Benefits:
  • Financial incentives: depending on circumstances, monthly family/marriage allowance of £272, monthly child allowance of £328 per child. Non-resident allowance up to £556 per month. Annual salary review, pension scheme, death benefit, long-term care, accident-at-work and unemployment insurances.
  • Hybrid working arrangements.
  • Private medical insurance for you and your immediate family (including all prescriptions and generous dental & optical cover).
  • Generous time off: 30 days annual leave per year, in addition to eight bank holidays.
  • Relocation package including installation grant (as applicable).

To apply, please submit a covering letter and CV via our online system.