Software Development Expert

2 weeks ago

Hinxton, United Kingdom Embl-Ebi Full time

About the Role

You will be part of a team responsible for designing, developing, and operating high-throughput pipelines to support scientists worldwide in ingesting, processing, persisting, and distributing high volumes of sequence data.

Key Responsibilities

  • Collaborate with ENA's development and operational teams, EBI's IT and Technical services teams, and the International Nucleotide Sequence Database Collaboration (INSDC).
  • Work with large-scale databases (e.g., Oracle, MongoDB) and distributed data processing software (e.g., Hadoop, Spark).
  • Develop software using Java and Spring framework, with excellent knowledge of the UNIX command line.
  • Apply modern software development practices, including continuous integration and deployment, application of various software testing principles, processes, and tools, system monitoring.
  • Contribute to a team with a range of skills and diverse backgrounds.

Requirements

  • At least 6 years of professional software development experience using Java and Spring framework.
  • Experience with workflow management systems and distributed data processing software.
  • Excellent knowledge of UNIX command line and large-scale databases.
  • Ability to work in a multidisciplinary scientific environment.

Desirable Skills

  • Experience working with sequence data and sequence data formats (incl. FASTQ, BAM, CRAM, SRA).

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