Data Engineer

1 month ago

Oxford, Oxfordshire, United Kingdom EIT Pathogena Full time
About EIT Pathogena

EIT Pathogena is a pioneering research and development facility that aims to revolutionize the diagnosis and treatment of infectious diseases. Our mission is to develop Whole Genome Sequencing-based metagenomic and individual pathogen clinical tools to identify Pathogen X and provide early warning of disease epidemics.

The Role

We are seeking a highly skilled Data Engineer to join our team and build a platform for genomic analysis. As a Data Engineer, you will be responsible for designing and deploying scalable data pipelines to support our mission. You will work closely with our team of experts, including Research Software Engineers from Oxford University, to ensure the success of our project.

Key Responsibilities
  • Implementing scalable pathogen data analysis pipelines
  • Contributing to architectural discussions
  • Improving quality and scalability of processes
  • Helping to maintain the cloud deployment of the platform
  • Contributing to selecting the best technology for the future platform
Requirements

We are looking for a motivated and proactive engineer who welcomes a challenge and the opportunity to learn new technology. You will be someone who can work collaboratively, and who acts with honesty, integrity, and good judgement. Overall, passionate about using technology to improve global health.

Key skills and experience include:

  • Developing data pipelines and deploying into a cloud environment
  • Performance tuning of platforms and pipelines
  • Caring about building a healthy engineering culture
  • Workflow tools (such as Nextflow, Argo, Prefect etc)
  • Python development
  • Terraform, Docker & Kubernetes
Benefits

We offer a competitive salary, bonus scheme participation, travel allowance, and a range of benefits including enhanced sick pay, maternity/paternity leave, and access to Employee Assistance Programme and online therapy services. We also offer a pension salary sacrifice scheme, group life cover, and group income protection plan.

Location: Oxford, UK/remote blend. Office based on Oxford Science Park with some remote working.

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