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Senior Bioinformatics Engineer

5 months ago

London, United Kingdom Engitix Full time
Your mission

We are seeking a Bioinformatics Engineer to join our Data Sciences team to lead efforts to implement our data commons, harmonize processes and data across discovery and translational groups, and scale data infrastructure as we move towards the clinic. You will be working cross-functionally with business domain experts, data science, and information technology partners to design and implement solutions for storing, managing, and utilizing public and proprietary datasets. You will be involved end-to-end in shaping and delivering the data and software engineering solutions.

What you’ll do: 

  • Lead portfolio of multiple data projects and work closely with business and IT functions to deliver data projects in a timely and efficient manner. 
  • Gather needs, propose and implement solutions to ingest, organize, and unify internal and external data sources. 
  • Define and evolve the system architecture as the portfolio progresses, shaping and implementing system features and user-facing capabilities.  
  • Coordinate and drive the adoption of standard representations of drug discovery data and metadata to integrate and harmonize proprietary data sources.   
  • Lead development of provisioning data pipelines for reporting and data science, including implementation of Engitix Data Commons.  
  • Ensure the security and compliance of data by implementing appropriate access controls, encryption, and other security measures.  
  • Champion and ensure data integrity through best practices in FAIR data, reproducibility, and documentation 
Your profile

As well as strong communication, organizational, and time management skills, you will have: 

  • Bachelor’s degree in a quantitative discipline: computer science, statistics, bioinformatics or a related field with 4+ years of relevant work experience in data engineering  
  • Strong programming/scripting skills in R and/or Python, as well as experience working with cloud services (e.g., AWS), SQL databases, containerization (Docker), and other data management systems  
  • Experience building ETL pipelines; writing CI/CD automation in Gitlab for building application images, testing, and deployment; working within development and production environments; and creating production-grade code (well documented, modularized code, with unit tests) 
  • Successful track record designing software and hardware systems architecture including API and database design, application development, and DevOps practices.   
Desirable but not essential:
  • Experience wrangling, managing, and analyzing high-dimensional omics, imaging, and/or clinical trial data 
  • Experience with SQLAlchemy ORM and orchestration tools (Kubernetes) 
  • Experience working in a cross-functional team in Oncology or Fibrosis 
Why us?

  • Be part of a motivated, dynamic team supporting cutting edge drug discovery  
  • Constant opportunities to learn, grow, and explore the many opportunities for data science to have impact on drug discovery and development  
  • State of the art offices at The Westworks, White City London  
  • Competitive reward package including private medical insurance, bonus, pension, and much more  
About us

We are pioneering the way to significantly improve the lives of fibrosis and solid tumour patients and their families. Through our unique understanding of the extra-cellular matrix (ECM), and our world-class technology and approach, we are unlocking insights and enabling the generation of new, advanced therapeutics.

At Engitix, relationships are the foundation of accomplishment. 
We are one team working together in service of our mission to significantly improve the lives of fibrosis and solid tumour patients and their families. We care deeply about what we do and the impact we will have. Our dedication to be passionate, committed and respectful is at the heart of how we operate. It’s our DNA.