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Bioinformatics Software Developer

2 weeks ago

Oxford, United Kingdom Oxford Nanopore Technologies Full time

The Customer Analysis Workflows group and Oxford Nanopore Technologies' is responsible for presenting bioinformatic analyses to end users through various modes of presentation from software libraries, notebook tutorial, through to fully automated analyseson the EPI2ME platform.
The Details...
**Duties**:

- to build and maintain bioinformatics tutorials both exemplifying best practice and exploratory data analysis of ONT data
- consolidate disparate codebases into reusable unified components
- define and promote best-practices for ONT's open-source analysis software
- liaise with groups within the various R&D groups at ONT to identify analysis workflows potentially useful to customers
- similarly maintain abreast of external advances in the field of long-read data analysis and the requirements of end-users as determined by various ONT's customer facing staff
- take ownership of newly identified workflows and work with others within the group to determine how best to present these to end users
- lead efforts to maintain continuous integration (CI) and continuous deployment (CD) of analysis tools and workflows, enlisting and leveraging the assistance of others
What We're Looking For...
You will hold at least a MSc (or equivalent experience) involving a substantial amount of programming in a high-level language. A PhD or industry experience requiring understanding of DNA/RNA sequencing analysis is desirable.
In addition you will be able to demonstrate:

- substantial experience in software development on Debian-based linuxes
- practical experience of handling sequencing data with exposure to common software (samtools, bcftools)
- familiarity with long-read sequencing
- expertise in bioinformatics workflows
- strong Python programming skills (development, testing, packaging)
- familiarity with continuous integration and deployment
- knowledge of workflow management software (CWL, snakemake, nextflow)
- a willingness to adapt, listen and learn new skills