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Data Engineer

2 months ago

Cambridge, Cambridgeshire, United Kingdom Origin Sciences Full time
About Origin Sciences

Origin Sciences is a pioneering biotechnology company based in the UK, dedicated to developing innovative medical devices for clinical trials. Our focus is on creating a minimally invasive and accurate diagnostic for Colorectal Cancer (CRC), aiming to reduce NHS waiting times and enable earlier detection.

Job Description

We are seeking a highly skilled Data Engineer to join our Data Team, responsible for managing our data infrastructure and integrating data between teams to streamline data flow at an organisational level.

Main Responsibilities
  • Manage organisational cloud resources to process large volumes of sequencing data.
  • Implement improvements to enhance usability and security of our infrastructure.
  • Implement automation to streamline data collection from laboratory instruments.
  • Use ETL to centralise organisational data.
  • Provide ad hoc engineering support to the laboratory and clinical teams.
Requirements
  • Bachelor of Science degree or equivalent technical degree or equivalent experience.
  • Proficiency in Python/R or equivalent programming language for data processing.
  • Experience configuring and managing cloud infrastructure.
  • Understanding of cloud security best practices.
  • Familiarity with integrating APIs with existing infrastructure for process automation.
  • Experience with containerisation, such as Docker or Singularity.
  • Experience with schedulers, such as AWS Batch, GCP Batch or Slurm.
  • Git and version control.
  • Ability to critically evaluate data-handling practices in a commercial R&D environment.
  • Understanding of data management best practices.
Desirable
  • Associate level cloud certification.
  • SQL and relational databases.
  • Understanding of how to process human genomics data in line with UK GDPR requirements.
Benefits
  • 25 days holiday.
  • Pension contribution.