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Bioinformatics Software Engineer
2 months ago
Company Overview
Oxford Nanopore Technologies is a pioneering organization located at the forefront of genomic analysis, with a presence across various global markets.
We engage experts from diverse fields such as nanopore technology, molecular biology, informatics, engineering, and commercialization.
Our leadership team, under the guidance of CEO Dr. Gordon Sanghera, has a proven history of introducing groundbreaking technologies.
Our sequencing platform uniquely provides real-time analysis, allowing for rapid insights in scalable formats, capable of analyzing native DNA or RNA with fragment lengths ranging from short to ultra-long.
Position Overview
The Customer Analysis Workflows group is tasked with delivering bioinformatic analyses to end users through various platforms, including software libraries and automated analyses.
Key Responsibilities
- Take ownership of newly identified workflows and collaborate to determine optimal presentation methods.
- Work closely with R&D teams to identify valuable analysis workflows for customers.
- Adapt standard bioinformatics tools for long-read nanopore sequencing.
- Identify areas for tool enhancement and collaborate with Algorithm Research teams to explore solutions.
- Define and advocate for best practices in open-source analysis software.
- Stay informed about advancements in long-read data analysis and user requirements.
Qualifications
The ideal candidate will possess at least a Master’s degree (or equivalent experience) with significant programming experience in a high-level language. A PhD or relevant experience in DNA/RNA sequencing analysis is preferred.
Preferred Skills
- Experience in software development on Debian-based Linux systems.
- Proficiency in bioinformatics workflows and familiarity with workflow management software, particularly Nextflow.
- Practical experience with sequencing data and common software tools (e.g., samtools, bcftools).
- Strong programming skills in Python, including development, testing, and packaging.
- Familiarity with continuous integration and deployment practices, along with a willingness to learn and adapt.
Please note that this job description is inclusive and does not discriminate based on gender, marital status, race, religion, color, age, disability, or sexual orientation.
